NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10011453

Scaffold Ga0209709_10011453


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10011453 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6307
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087763Metagenome / Metatranscriptome110Y
F099426Metagenome103N
F099884Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100114531F087763AGGAGMAQMRVKDQDLIVEQVIKKIESTELANFKDSKSAQSIQSIMDTRIDMIKTLHDTYKEYEKNIKDDIKELVELVDSFQELNGFKKSYEYGGTKGFRLNNVSNYGSPDIPTYEITWKLPTNTKRELAVKLRMQTMSGDFDVYKLIDELTSEFSS
Ga0209709_100114532F099426GGAGMKIRKIKRRTMPTFEIITNKKAPPRITTPKSFYRDLIGSMKAGDWFVVDSKDKSKVSASVMKYARGRHSLYQHPEFEGKYVFVLTK
Ga0209709_100114538F099884GGAGMENLIEKISETRQERLLNPQMSDHFKTFFQGKYGVKIYDIKVGRKWVYIRSNSHRAKLSMAKFKTQAFVQWHCDARTHASSETYVETGKYRKKQGWWKNYGFESNPADVNINRGHLIWK
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