NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10014985

Scaffold Ga0209709_10014985


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10014985 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5315
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011529Metagenome / Metatranscriptome290Y
F045374Metagenome / Metatranscriptome153Y
F098043Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1001498512F011529GGAMWIKESKRVTIHQLKDKGMRLRSCGLWLDENGFHPFLDPDTLITPDLEKQMGCKFDDLPKEAWDTMDRYDEAA
Ga0209709_100149853F045374AGGAGMICHECNSEPFEVVVKEELGFEHEAVELGLEVTHCPFCGANLEWAERGGFDASEYDNDEERLDA
Ga0209709_100149858F098043GGAMKKDLTKIVNDLLWAADDVCLDNSKDACGMDADIVRCPLGQNDWDNVPDKGVRAILQQHGLKLSDINALIDAGVMVLTDNDDHGGCVIDDRCLHVSMHMDKVLKHMSLSNHNLLQVTPDQMMAMDHMDHDDQVDHQRMMMDQMA
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