NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10017880

Scaffold Ga0209709_10017880


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10017880 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4748
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F012919Metagenome276Y
F025857Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1001788010F000615GAGMCRLRCFYECSDGKMGWAEIVLSYDDDIAGHIRHMGTGGRMVISEYFEV
Ga0209709_1001788012F012919GGAGMKISRKKLNREIIKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQISYVEKNSL
Ga0209709_1001788014F025857N/AMTLHRIAPGCTFESEDDVVMNPVIGRKKSVAEKSPKPYYRTSELDNIPDNFAERMRKFKRVEVRKEEREVITPNGFAVSIAFNKGNYQLIPKEDL
Ga0209709_100178809F001048GAGGMKIVSTKQFWWRLNYLKRNGGEITVTDRTSEMDVKDYNRIELLVNKRVRWELGSEDYMKWDSCGVKDIPTLARAYGIK
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