NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10065722

Scaffold Ga0209709_10065722


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10065722 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2022
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012510Metagenome280Y
F017398Metagenome241Y
F034993Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100657221F017398N/AFKDDGKKISLIIADYIDGVNAILKKHKKDIQGVVHGYYVRRGAVAVKHPSGRMVGGDSAIKEWNVYDEQIVDKIKILKVHTFNTTTRETDWLAKSVIPRLGKIPHRHWVGGATELSTYVSQVAEAEVRSIGRSKP
Ga0209709_100657222F034993AGGAMKTFKGYLTEFVIQSTSDYVFDTLSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDAEHLAGLKKLEGKKKSISAFFSMMAREMEGGIATDGGVVIEMEADVLISAKGDIMSAVDKTGRRWVEMSWFENAQGRGNPAGFDKVEQGFNTLIKNLVKKYVPKEQGQPLEIWSNMKSHLKAGREGGGKRLSLVIKDYFDGVEKVIKKNKKVFETIFYGYAKSKRQTDNAWDEQIVNNIKIKKVHILSDVVDLDDLHDMYPKGLVREFPDVRFWDASIELEIYTREVVKKEIGR
Ga0209709_100657223F012510AGGAMKTFQEHLTEVYKDYDGKGWVLGTKDEPKPKDKDIVWKSKVHHYDNTVRSDDTRFIIVKNKGKFSMYAKSDKSGKIVFDFGDKPTLDAAKEYASIRKWQEKK
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