Scaffold Ga0209709_10074001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209709_10074001

Scaffold Ga0209709_10074001

Overview

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10074001 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1870
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	79
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F008914	Metagenome	326	Y
F099863	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100740012	F008914	AGGAG	MIDPFTEQTEEQREDVVEETRKWVRAWDADQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN
Ga0209709_100740013	F099863	GGAG	LKKDEEELKAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR
Ga0209709_100740014	F005103	N/A	MEDNNIQIFINKKEMPYSHQNMIRAINSFFPYLTNDDLNELSEYISTLKDHREKKEAESKVEVEKHSWPYPDTKNQI

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