NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10004608

Scaffold Ga0209502_10004608


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10004608 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10273
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000898Metagenome / Metatranscriptome845Y
F006896Metagenome / Metatranscriptome362Y
F056079Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209502_1000460810F056079N/AMERLVNFISSIRTDHKAHLIVGVLSGFPMVLLFGNIGGLIAIIIYALKEVVYDKLLGKGNMEFLDWLYSSIPVFQLLIIHNL
Ga0209502_100046087F006896GAGMANEIYNSSWWGLPIQYGWGGIYYNYANPSAIPNLLTTLQARATYYENVTCTTAILTALENIE
Ga0209502_100046089F000898N/AMKIYKTVFDTEAQGKQVLIDKEVWKEVTEESVTSMQYINGTKAVVYIGKVVKTPATYDKDGNELTPPIYYDGVAYDVMSTDDLDFGDNEVYPKGEAAHQFYGFARDAEVPKK
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