NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000540

Scaffold Ga0209500_10000540


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000540 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32394
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002391Metagenome / Metatranscriptome564Y
F004474Metagenome / Metatranscriptome436Y
F089575Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000054029F004474N/AMNYLLSVENLKKLGLIHMNTDTKILSVCIKRSQDMHLQPALGTPLYKALLHRVETSTWTQDYLTLMNDYVVPCLVAFVDFRAAAMLNEKLTNKAVGRQSDETMTANTDTETVHLRDMLRKDAYFYKERLIGFLKDDNGVKYPEYLVCCDDNSCNESMTKDQTGYKPFGWIV
Ga0209500_1000054042F002391N/AMAVWEEILVASQGTLIVNDTNEKTIAYDAIFVLEDTVFASIKVGGVDIKAQLITTPATAVKAGAMIRCTGARKFSAIDLTSGSVALIL
Ga0209500_1000054045F089575N/AMADDLQFLDSLGISQTELTQPQTAYEKFILGLANEVTAQFQEYILTNVNNTGGLAQSVVYFPTGALSFEIQADEYYKFQDEGVNPVGQNKFQTPYSFKYPNVSKNHAKAIQQWKGYDLSHAYASASATKNKYGIKPRNITSNVMSNEVLDRIANDLAAVTGLMFEISFTKNTRTWQ
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