Scaffold Ga0209500_10000708

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209500_10000708

Scaffold Ga0209500_10000708

Overview

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10000708 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27694
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (61.70%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F042202	Metagenome / Metatranscriptome	158	Y
F104603	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000070831	F004789	GGAG	MTLPGSYQNPSTKPCWVYCSSCSRCQDKGRYTKCNGCSGRYDPAGKIDVHNDDFCDCKNGVLRWRTKSGKLLMTIFKSNPFKGTVKYEKKSEDERDWDSYVADMQEKMDDPNFNPITIYE
Ga0209500_1000070847	F042202	N/A	WNNQNIGYSLACNGMATYGAGDIICLLNADVWLTTQDLINVQKIFDENQDIHILGPKQRDENGYITHAGIVGTNTAPKHRGWKQHDPNDNLFKDRVNCVTVSGSAYFIRRSVWTSLTSDREYQRMYPGVLGAFLPTPHYYEETWCSYFARHRGYNVVYDGSVSIGHSWHASSPKPGEGYSEADSKFKVSQEIFRKACDQLGIERD
Ga0209500_100007087	F104603	N/A	MDNVNPFDGFMPTINNIVISKPTASITSNGDLLDVHCVTIKTLEKEYVFSISPNDLSKLYFLILKVLSDR

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