NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10002137

Scaffold Ga0209500_10002137


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10002137 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14357
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000903Metagenome / Metatranscriptome843Y
F001731Metagenome644Y
F009883Metagenome / Metatranscriptome311Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000213710F001731N/AMTVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYINLELINLDQSNVAIEINDGLTIELQDSTATFVPIFGGSVVEVGIAVAEVGSVAYAQRIKIIALGALSRLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALQWQTYEPTEQWQNAQNTGLGEIDTPGNYELAHRSSSRTDVYSLVAALATSGLGYIYESPTGQISYADSTHRSTYLATNGYVDLTANHAIAPGLSVQQRAGDVRNDITIKYGQNSTSETSANDPDSIAEFGQLSQIFTTTIKHQADAEDQADFYLSLRSYPQFNFNDFTFELTNPELDDVDRDALINVFMGMPTRITDLPLNMAAGTFLGFVEGWTWRAAYNSVSLTAIISPLAFSLQAMQWQDVAIAESWNTISGSLIWADALVVA
Ga0209500_1000213716F032155GAGMSVGEWTAVGGFVIAILAAVYSSMRIIIRSVMNELMPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP
Ga0209500_1000213717F009883GGAGMNEISIVIFMFIAGTLWAVMAYSVGYREGQRQGYTRGRAVSRHIAASQKAAK
Ga0209500_1000213720F000903AGGAMIAAIQHCHDKSADHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSINPASNLWIQESDRHDRDIAVLVTGSSPNMKIMGWMPVVIAKKPRYRNPSQNNWSVPQINLQPIETLQRSNYAHSIV

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