NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10009275

Scaffold Ga0209500_10009275


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10009275 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6126
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F010081Metagenome / Metatranscriptome308Y
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000927510F024047GGAMANVNTKEIIEWVKNAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNEYGDLQIVRFLII
Ga0209500_100092753F010081N/AMQDKISDIITEYSEKMRGVDKTKSIPMVVKELDIIVYDMYRQLYGLRDIRSSNYNLNNFTAEDKKGHCS
Ga0209500_100092754F007859N/AMKSLLIATLLFTGCTSGMYLRYSYNRALQTLPKCSTVCAINNRYITYSIIEHSTNNVYVMYTNYYRAYYTADGKIIKTTPNK
Ga0209500_100092755F008688N/AMNRFNKIVLSSLATILLTAMTVELPKIKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKDSHNYSVEEKELTE
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