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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027783 Open in IMG/M |
| Scaffold ID | Ga0209448_10000025 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58737 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (80.39%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000564 | Metagenome / Metatranscriptome | 1021 | Y |
| F001158 | Metagenome / Metatranscriptome | 763 | Y |
| F001567 | Metagenome / Metatranscriptome | 670 | Y |
| F007764 | Metagenome / Metatranscriptome | 345 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209448_1000002510 | F000564 | GGAGG | MKISLTPEQERRVQAVMSRGAYQSVEEVVEAALAAVEQRALPGFAGTPAELDALLSEGLASKELTETEFWSSVGKQTDALLAERKTGLRS |
| Ga0209448_1000002518 | F001567 | GAG | MRKECSGYCSFSVMELPKKGVLASIAIVNRNPVFVCGNMVGVANMERAMIWIGGDDKGWGCSNCRWKYPVPTLLGGEEAKSAYDRLAAGKFRDHKCEAGITVFAAEPEAREASASFSDRARKLIKGGYKPKVAVEIVLHEMEFEQGNNPKMMQKARADAEDFLMRVGKGLI |
| Ga0209448_1000002549 | F001158 | AGGGGG | METLCVVLYQNDPRIAQVLAVSLSQHFDSVHLARTCEEVRPAVARHRAEALVLDLETSGPDEVDRLHREFPGLCIVGTHRLADDKLWAEAMSLGASDICEPRNDDVVRSLLHSVSCRLAYHAAA |
| Ga0209448_1000002550 | F007764 | N/A | MPVTVEMHNTADAESRRDVIAMIEHILSDRPGDWRVVILGSQANDCWEMKVTGPNAFERSYTLEGTLGQHEPSTVAAIIAGMLPSRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |