NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10000030

Scaffold Ga0209448_10000030


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10000030 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52635
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (60.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000828Metagenome / Metatranscriptome872Y
F005961Metagenome / Metatranscriptome385Y
F010410Metagenome / Metatranscriptome304Y
F055955Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_1000003035F055955N/AMRVVEILADKDSRYKIGRQVSPTLTFKAGEEVQFRITAKKAKTFNRNGSIHGFALIRKKDGAKIPNWDLELKPGYQEFVLRVPSEPGEYQIVCTVICSEGHEDMNMKVIVIA
Ga0209448_1000003038F000828N/AMGKRMSIFDEKYRVVAIEGDRLLIRGVVSGDVLAIVNPEPETPLTQEDYPLGKLISLTDPSVAPLN
Ga0209448_1000003040F005961GAGGMKILLFAGLLLVVLGIVSLVVPIPQTQTDRIKVGGANFGIQTSHSERVSPLISVLLIGGGIALSIAGTRARN
Ga0209448_1000003044F000042N/AVPAAIRQFENLKGTMKNIKFVVKLNRGAHAPQYVLRVDRLPILTTTNRKLALVMGRFTAEDAVKSMQNSHCTPELVSVRVSA
Ga0209448_100000307F010410AGGAGMHSTPANAKSFSKFSTGFGIALLLIPAAFAADGKDQDKDKDQQAYCRYVTEQASAQRDLLLAPNAVVGVTQPNTGLPMQLVWGVSGSLSSMRKAGLTMNAARRNCELYSASTSAQRDIQYALPSLEKQALQNRLGLIQHASESLAALLATTAKMLDAQNMTRPMAFALQTTKIKLDADRADTQLKIVGLYTLPLSDRPLKELVAEKQSREVNEQKALDKLSRQNDWDVALSVGAHQQIDPLVDTKGAYGEVTVSYNLASHAINKHLDRAADAYDDWKKVQEGDVIRNADVVKQQVEDGISVQDNRLKILQEEQKQIENNVQLLGAAETSAALDFRNQLTTAQLLLEIEIGDASFRLEQLKEFLGRNF
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