NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10003209

Scaffold Ga0209448_10003209


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10003209 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5051
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y
F017965Metagenome / Metatranscriptome237Y
F092546Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_100032091F092546GGAGVLSEVQYRCVGRYREAVIVLLLTVLAFSVRLYRVDFNSLSEDEVAKWTAVQEYRHG
Ga0209448_100032093F004823AGGAGMYATKAINGVPAIQRDGQSVLSVCHQDWEFANWLCALLNELGDKSELLLNEQDWEWLKAIDSPFRRTAQHA
Ga0209448_100032094F017965GAGGMDSKANSRIALTDMSEKIEHRDALYLFACHLEWLTKRNLAAYQDLLAALDDHDGDIRRLAESLLHRSSPRPERTCNSYRILVK
Ga0209448_100032095F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQAKCLVTRDVLPEGLIVDLTEVSYIDAVGEQLLKWLASVGTLFVPGNVYAIAICDRLRLPPMQRISERRKRRYGNNKERSAINHSHPVKAI
Ga0209448_100032096F001596AGGAGMSWFHSSRAAVDARNYASPGEIVACFQDQRNVLVRLAFFITGDQATAEQAVVQACEMTLQGNSPFRVWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAPSLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHATTWLHDGHVKAVEENRDASHATQF
Ga0209448_100032097F010114GAGGMIIELNDDDTRLLHTVLLEQAQEHLSYADTSEVAERLYKLATRLERPVRATNITIA
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