NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209246_10000452

Scaffold Ga0209246_10000452


Overview

Basic Information
Taxon OID3300027785 Open in IMG/M
Scaffold IDGa0209246_10000452 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17472
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004839Metagenome / Metatranscriptome421N
F031483Metagenome182N
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209246_1000045210F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLLTIILTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEQYQGGEFITMFLFVGTIVVFGYLLEINFVDKGVEAYGINEPKVIKRRKRKPVAKKVNEDSPKENKGYVTSFQTITL
Ga0209246_1000045221F031483N/AMNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDVVTIIHDGKSYKVAFDMVTANEIPEKVQTPTETNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFQQLQASGLEPAQAQPAAATIFIQIGKYF
Ga0209246_1000045227F052398N/AMNLPAIAMTIEEKIQDIQIVIDNREKRLFKTGIIESLPKINEVVKNILPLYGIEASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKLQEEQRQIEAKRKFYAEFPEMLSGFKGESYEDVPAYWYDAAMSAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKA

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