NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209074_10264846

Scaffold Ga0209074_10264846


Overview

Basic Information
Taxon OID3300027787 Open in IMG/M
Scaffold IDGa0209074_10264846 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013222Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0209074_102648461F013222N/AALHLIEAATLGTSTNGSFLANLLEIVACGFAAVMAFGASRRGRGLSRPFWLLVGLGISMWGLANLGWMYYEVGLHSEPPQASVVRFLFGFEAVLIALALFLDQDKDSPRIGVETALDFVQIGIVFFFIFLEFYFLPARQMDAHSAFLREMRVENLEDVMVVALAGFRALTAGKQHLRKLYRGLTLYYLVVAVFAAVAQYLQSVQPTPTGTPRDLLWTLPFLTGA
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Institute for Fundamental Biomedical Research
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