NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10045722

Scaffold Ga0209711_10045722


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10045722 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2448
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015734Metagenome / Metatranscriptome252Y
F019756Metagenome / Metatranscriptome228Y
F050011Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100457222F050011N/AMNVSIEKFSDYLKPYLLQTVAICTDKKIIRKGKLRIFQMKQHYARLTLEDEVRTRIYEIPYPFNIGTSGNRTTLSYKVDEFLNFDDLELQVKLLDSTKKSKLYDNNVYIMPLAEVDL
Ga0209711_100457223F015734N/AMIIQRTTLDSLLLNKVCEIRFVRRRPRAGDGPTRRMICTKSYEILNSVNGRTTLNYRPPSGPVQVNEARDNLIVVWDILMQNYRAISMTSCDLIQDIAANDFWEYFNENIYPMSPAQKFSFMNS
Ga0209711_100457224F019756N/AMAQRSIDTLATQKHLIDLSTHSEGDMGLTDDFELQMIFDDILLVEYVDENETGEIQRNGIFVPTNAITKAWRKARVVLIGPKTVYTKVGDVVIFPNNLGVTVANIDVQGKKIKKGIFLNEDRLFGICKLKDDNTEDNS
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Institute for Fundamental Biomedical Research
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