Basic Information | |
---|---|
Taxon OID | 3300027788 Open in IMG/M |
Scaffold ID | Ga0209711_10129390 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1238 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019327 | Metagenome / Metatranscriptome | 230 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209711_101293902 | F019327 | GGA | VTLKHYTLNPTELDNKHITQIHKIIKQVINNKSDEYWKNYEDYSVFEQTAITIGLIEGEVKTFSSIYNREFYGDNVYRLFNRFLVSDDIRETGGSKTYDGEHRFFEMVNQQIEYVKSLNPSFYFMSRQRKNTKWLRWYFDKFNKQYNEDLMVSDRQYMVCNGSEYDCSQTLIYPKDKIVPFKSYK |
⦗Top⦘ |