NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209830_10223561

Scaffold Ga0209830_10223561


Overview

Basic Information
Taxon OID3300027791 Open in IMG/M
Scaffold IDGa0209830_10223561 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001156Metagenome / Metatranscriptome763Y
F005546Metagenome / Metatranscriptome397Y

Sequences

Protein IDFamilyRBSSequence
Ga0209830_102235611F005546N/ADASKLYKATNESLVSLIECYYLIEGTGTLTISVESFGDKLSLVGKGKYGLRPDQLKFGDDKQLLLTTDSDVKSYLLVTEFRRNN
Ga0209830_102235613F001156AGAAGMTKKNKDYSKEILERIVGTKSKATLAEKFKEAFAEKYGIKREELKKGIVDKVYNNKEKVERXN

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