NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209287_10266502

Scaffold Ga0209287_10266502


Overview

Basic Information
Taxon OID3300027792 Open in IMG/M
Scaffold IDGa0209287_10266502 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024768Metagenome / Metatranscriptome204Y
F056403Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209287_102665021F056403N/AMTKIEIGSKWKHKNSNDVYVVMEQYSHRVVLQHELTGTIIKLTVGHLNPDGFDEYERDTP
Ga0209287_102665022F024768N/AMDYETEIINGYKAVVRHIFKPKEIKVGSRWVAADGGGLVTVEEIKMYPASDHEENHWYMIYYSWYENGEKKTHHKDHFSFQCRYCFIIEDN

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