NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000204

Scaffold Ga0209972_10000204


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000204 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60156
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (15.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002643Metagenome / Metatranscriptome540Y
F075742Metagenome118Y
F085263Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000020421F002643N/AMTIKKSYKDLNLLVNQISNTIGNQETKVQKKLFKMYEKLKPYSEEYQKKIEELRLDNAATDDKGILLVDEKGGYKFNKEGIKKLSKQIEELSNKEFEFKVIEVINKDGLETLTFLKDWTTGIDFIQEEEEQL
Ga0209972_1000020438F085263N/AMAKSKVVEEVIQEDVQLSEETIAEVEKAVSPKDAYALPELKKKDVVTTPGHTTRAFRQ
Ga0209972_1000020445F075742N/AMKLRFSNSVYKKDLSNSIYQQKGASFGLSVSGGMQINNRPDGITGIAQAASIRKDMKRSQKVQMMSEAVFLGNIKSEMMEGPEMD
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