NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000230

Scaffold Ga0209972_10000230


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000230 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55900
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (20.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010082Metagenome308Y
F028540Metagenome / Metatranscriptome191Y
F032654Metagenome / Metatranscriptome179Y
F062693Metagenome130Y
F065704Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000023016F028540N/AMNPVVEAWIVIEKLGALVATPGVSEAVKESANEQIRKLLDDVVAPSLTELAAKRAGLLIK
Ga0209972_100002302F010082N/AMLSPRLTNCIECNTITALLAEIDCKVAELAKNEYNNVVFALNYPLPGTVLDDLLNYKRILRFKYCNGSYGAPFTLNQIASRVKVLIHK
Ga0209972_1000023039F065704AGAAGMGANWFRTYGMGNSVRDAYNSAVEDANYEHGHQEGYSGEINSSAGFRDVTREFKASGKSLNEYIDGQQDKLTKHQGAQAICIQEPKSNTNKIKTQVEHIVTPGTKKWVLMYVVYCSEDRVMSAPTKGEAVKLAREYSEKHQCTTMIRMERVLEKKDHALVAKVTYKRASDEREGKWLFFGWAAY
Ga0209972_1000023071F062693N/AMKSKIILDIEEDELNLFNKQYLSLPELHEEIESLFEQGEKLDKRKKKQVSEWKEKINFLIDMYNTKSKFKTYNKVK
Ga0209972_1000023073F032654N/AMKNQFFYTRKELKSGTPENPVYNEFRDSFNMEKVVRSLTIEDGRVLILLDDLHERAQEVPDVDPRTNKVKGMKRQKNTFQSEIYLEPEDAQRFFELTSIG
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