NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000957

Scaffold Ga0209972_10000957


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000957 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27064
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006467Metagenome / Metatranscriptome372Y
F007913Metagenome / Metatranscriptome342Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000095738F004668GGAGGVTTADHIEELHQQGWTRVDTAPGEWVALVPNDNNSAFGGTLWRLADDGNYYAEGVTEGHPISAALGFEQAARALAVFIKEELGDA
Ga0209972_1000095739F006467AGGMLKNIILDLIGGAWTILGLGFAVIVLPPGGTQETMSALFLALTFVWLITGPLRWRE
Ga0209972_1000095741F007913N/AMTKSQVDAILERLDRIESDLACVRVEMAETRGAYRLAKFVIALLGLSGLGGLTAWLSNGK
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