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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10001617 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19377 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (94.74%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006653 | Metagenome / Metatranscriptome | 367 | Y |
| F009331 | Metagenome / Metatranscriptome | 319 | Y |
| F038999 | Metagenome | 164 | Y |
| F066470 | Metagenome | 126 | Y |
| F075715 | Metagenome | 118 | N |
| F093483 | Metagenome | 106 | Y |
| F100350 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000161713 | F075715 | AGGGGG | MNKEYLIAKADLCKDLAIEQLTNGDEREGVENLKRMIRALEEINLINYLEERKGR |
| Ga0209972_1000161716 | F066470 | GGAGG | MEIARRIESAKRSAVSYRNYRRARDRAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTDQHMDLNASASLTGGGEGDQASSGPDQGNDGGKA |
| Ga0209972_1000161718 | F100350 | AGAAG | MIYAFKCECGNTREIEQSIHAEIIEPMCTDCHSSMSRLWSSPAITFKGPGFYSNGG |
| Ga0209972_1000161723 | F009331 | AGAAGG | MICDNCIKAGEENSLNHLKRAAHWHEKCEGCVCQHKTGQGWVKVEGVRTPLLQTQSP |
| Ga0209972_1000161727 | F006653 | GGA | MAEVQLTNKYRDSIKIEALRTDVDAIKVDLTNFVGALLQSGIVELVKDEEGNVVYKINKVVLVDEQPEVQ |
| Ga0209972_100016174 | F038999 | AGG | MSNDKALTVYPCSCNGCRNYPTRPAEIWHESQIASKAQGYYFTRDTMRFFNSRIADFKAVSITPRADSLMVIVSSKRDDLPREYEIVTLCPYGELGREWLKDSDGSPIAYYPTLKDARKSARWNCTIAPQICDCHGCALDREGRI |
| Ga0209972_100016177 | F093483 | AGGCGG | VIIERVRPSGAIVVSALVYWQGVKWLESSTYYGYSVRDAKRSYRESCARLGYEIIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |