NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10002268

Scaffold Ga0209972_10002268


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10002268 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15857
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033727Metagenome176Y
F039051Metagenome / Metatranscriptome164Y
F056429Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000226811F056429N/AMSEDLKIMGYYKNVTRDQVVQIKDFKKDKLWYETIRQYEANPITEFCCSVERFKRLYIKT
Ga0209972_1000226829F039051N/AMIPVTQILDIIKKQGATGVLALWLWYTHSDVQDLKARLYDCYGKDKTSSATKEIKDTSVVAIIPKDELNEE
Ga0209972_100022688F033727N/AMKQQAKVLSEANELTRLMIRHYLQKHELSLNAFSKLVEIKQPNLHKFLNGSSLSSKSIEKIGEFFSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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