NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10005038

Scaffold Ga0209972_10005038


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10005038 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9822
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012570Metagenome279Y
F019121Metagenome231Y
F028501Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100050387F028501AGGCGGMKTITAKYDGFCAATGARILPGDVIQWKRGRSVLLQRRAAKIDTVTLIGEHGPRDYYRNARGRCIDAPCCGCCTI
Ga0209972_100050388F019121GGAGGMAYTLKRSINGLTHDDIRRIYEQNLNMTLKELSNLTGYAIPYLKKILMEG
Ga0209972_100050389F012570GGAGGMQTIVIDGTTYKVKFDRDPIELAKAARKPYRPKKPKDIRKFPTYTPAVSTAEYIKRFDSLNFLQAVQYTGASAETAAQYDSTIPLFEVFNDD
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