NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10005482

Scaffold Ga0209972_10005482


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10005482 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9323
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F010680Metagenome / Metatranscriptome300Y
F088554Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000548211F088554N/AMTEKHSWYKAEQRRKQIAKEKKLKAARYLDEMNKRAEQYDATHPK
Ga0209972_100054824F005146AGGMKLINFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFVSVWNEEDIEEPVLVTDKIEVTALVLATITSERERGR
Ga0209972_100054826F006743GGAGMRTENWQSNTRGLRLVGEEENGSASTIFGPVKAGLTTTHKTQSQALSELLNSLEREVESLHSKYCEAYVTLTSVMEHLVRLTGLLLEKDTTKIENY
Ga0209972_100054828F010680AGGAGGLAIVTLTPEEVRVCATLGIERWLTKFGSVDRPNYAEGKKSGSLEPELNANIRANVSEWAVARLYNLPWNVPWYPNKYHTQRKEIADVGNFEVRTVRTRNAIPFWTKDVGRIIYGTKVLDEEYFSQVEVYGWFEADKFMEDTFYDEKINGWRVPVELLVP
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