NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10010833

Scaffold Ga0209972_10010833


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10010833 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6104
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002371Metagenome / Metatranscriptome566Y
F009003Metagenome / Metatranscriptome324Y
F036096Metagenome170Y
F053068Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1001083311F002371N/AMVKKKETRGGTRQGSGAKPKYSEQTKTVAFRCPLSKVDELKLVVKSKLSEWSVK
Ga0209972_100108333F036096AGAAGMKATLTFNLTDDQHSFDCAINGKKYYDILDEVRQHLRSLEKYQDLTEEQYEIIVKVREWLHEQLLDSGIADKF
Ga0209972_100108334F053068N/AMTTEAKKETALRRLHITLRRKFKGQAIRMTWAEMEGLLNAAQTIEMNHIINAYNDGYTDCKAGLPNRSKIESDESNTNL
Ga0209972_100108337F009003N/AMKAKEKAWQLYSNYFDIIENGKQEGSLIEVHNKAINAALYAVDEALMNAPTDIVNDFEGTGEYYSVKAYYNHVKNELLKLSKHDPQRTQPVQP
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