NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10016471

Scaffold Ga0209972_10016471


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10016471 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4680
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F004666Metagenome / Metatranscriptome428Y
F018162Metagenome / Metatranscriptome236Y
F083783Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1001647110F000868AGGAMQHGAYDDENEMVMGAIMSDIADQLLDDWVQSNLDEGQFWSDYQIASMCDSNYLKGRFNQFYDLKPEDQYYVEVNE
Ga0209972_1001647112F018162N/AYATRIAISNLIGDGWSMETGWGLHVNEIGDNEHKIAIVDFTQMTFSLHEEDSFYNLDNKVRGMKNEAIFTMDLRSFVEKYTDAQILV
Ga0209972_100164715F004666AGGAMTSKREYLASKGITVGRRGRFSAAAKQALSEAEKNGIKFTAEVKQAKN
Ga0209972_100164719F083783GGAGGMESEYVYRKGKLIEYLKLHIISLNQDLEQLSSRMDSLDPASKDFAELDVEYNWTSGQVSATDHILSVVEDIL
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