NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10020398

Scaffold Ga0209972_10020398


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10020398 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4074
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F017469Metagenome / Metatranscriptome240Y
F022400Metagenome214Y
F027758Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1002039812F022400AGGMRKIVIESSQRTTLRLVSGGKEKSGSAYSPFGPVRAGLTTTQRTNEDQVLTELLNSLERKIVELNSKSYEALNTLINGINHRAEPTTSSLNTTITK
Ga0209972_100203984F027758AGGMLTDLIFSFAWVIGFFFFAGGIAWLADQLVSFHLDGMARVRRLEEKERESEGAR
Ga0209972_100203987F006842GAGGMKAIPAICGDHLVPISECDCLSYMREIAQSAERLIQLTKEREEMSK
Ga0209972_100203988F017469AGGAMKDICQFCGWEIRKPEWYNSYDGGFACDDCLMNQAVEKEKENAI
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