NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10027832

Scaffold Ga0209972_10027832


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10027832 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3319
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F004666Metagenome / Metatranscriptome428Y
F034924Metagenome / Metatranscriptome173Y
F068492Metagenome / Metatranscriptome124Y
F083783Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100278322F004666AGGAMTTKREYLASKGITVGRRGRFSAAAKQALAEAEQSGVKFVAESTKTPKK
Ga0209972_100278323F034924GAGGLPIYRVFGRKYQDFYTIVSAADEYEAADIANARPEIDWDRVEMDDVIEATDVFLDDDTSADLQLNID
Ga0209972_100278324F001019AGGAGGMSNYVASLEILEVAYEVSPGGVRTFEVYDKSEIDPVSIPIYETESLTDAVEYCYDLGRDFIVRTYAEWEMREMLADL
Ga0209972_100278326F068492AGGAGVNSTYLEPRLQKLVDLGETGTDILHGELKNLMYKAEQEFLEAQSIEEENDYSDAMESMERKYWEGQCDALEHVYALTYQLAFAIQERTKKNGN
Ga0209972_100278327F083783AGGAGGMETEYINRKTQLVTYLQLHAQSLNEDLSQLSNKMDSLDPASKEFAELDIEYNFTSGQESATMHILEYVEEIM
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