NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10028224

Scaffold Ga0209972_10028224


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10028224 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3287
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F003377Metagenome / Metatranscriptome490Y
F060645Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100282242F003377GAGMTDQAKDTMFGIIERWGFPTLVAIAVGWVLRHDVLLPLVEEHRTFVRSLSETQREISQAVSEQTRLLYALQPKLGRPAKGEPDAD
Ga0209972_100282244F060645GGGGGMRWLLPLLVVLVGCVATLPGDDGLTADIACETARMVVQLRQQIPPTPAPPSDGKCTNCNGRGYVGDGTVKVKCQPCDGTGKAKR
Ga0209972_100282247F002540AGGAGMPDYGATPAELSQYGNNLNLWQSLMLLQRWSPLIGYGQRFVNEVDPYRKSLIVGEAAEWLASQTAAQTDDRLVRLLADLLRTKEGEALVRFILLQVEAVR
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