NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10038976

Scaffold Ga0209972_10038976


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10038976 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2676
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F009396Metagenome / Metatranscriptome318Y
F073145Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100389761F073145AGGAGGMAQSVGNAKNILVGASPLFLSTIDVNDSDYISNAEAGVAIASGAGTVGVPAFATGVSYTSTLNAVDQQAGKFGYRNVGFTNNGLQITYNPTYDSVTVDQLID
Ga0209972_100389763F001900GGAGLDNSGLLVQASSGLERMMYSNQSGPLKDSTVAQISAYVYYEAAVISKLTTNNQFKALFTKTIFDQINTDFGNYIDALARSKTKSLHHVYEWKKTGNKTARLFRLNKISEEGLSFRVNYEFTPSRSMVPAPTGRRRHMFANKASIMEEGKPLVIRPKNSERLVFEIDGETVFMPKGKSVTVRKPGGSASTNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSVTKALSVPSNIKKVQYSFSPNLIRSQADAALAASFGGAM
Ga0209972_100389764F001229GAGMNSIVDSVLSMNLDVYRQSEIQDTDTGAIIREWNYHRTIACHVKGVISNSATTRSSDKQIFSNKYLNDQVVQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0209972_100389765F009396N/AQKFYLYDDLYVVYGYESDILPLPAKIHEIHELYVNDILLIDTLNDINNWNYPVQISESGYGIRINRANLLDNTVYTANGMVPPSIHDSSGVFQSGVPYKVQGRFGWEKVPDNIELAAIELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTTKVEII
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