NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10047923

Scaffold Ga0209972_10047923


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10047923 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2343
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F008078Metagenome / Metatranscriptome339Y
F051874Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100479233F051874N/AMVWGVDLTLFIKLFLYFYIIYILCIYFICIFERSTGQKHSSSHNTHIMTILESIEQKVAIAVEAINAILPEGYFTTNTISSTNFGNSGYIVIKKVCPIDYIVQICKVRISDHYATNSVRESSEIMIDQLRFNLDELMTRVERSMFPERFEQVEIRTLTGDLLTSNFQVGRKPYTTLTEPTFLGEVIGKKGNLLHSYSWMKEDVRFEWRKK
Ga0209972_100479234F003786GGAMNLTKYQPRNQDEQAIIESRPNRIANIEAKDAFRNVLNVISSLFPLHGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLIYRRKIIAAHDNEVAALRHNANMEEKARKTRKELYANFPTMLKEFKGKDFTTVPLYWYDMCVQFNMIEYEEGEKRALWEEAQALALKEPPESMDLMSIRSHAKKIEQGNTRRAVVIAQQLAVWRKVLK
Ga0209972_100479236F008078N/AMTPKEKAEELFNYYHNLIQDIGGELGQEILVSILARHCALFAAREVLKEKYKIKTANGYDEYYYWEEVEHELENYEE
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