NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209139_10000797

Scaffold Ga0209139_10000797


Overview

Basic Information
Taxon OID3300027795 Open in IMG/M
Scaffold IDGa0209139_10000797 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11339
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F000673Metagenome / Metatranscriptome944Y
F002076Metagenome / Metatranscriptome596Y

Sequences

Protein IDFamilyRBSSequence
Ga0209139_1000079710F000321AGTAGGVPKRRSVHFGVYNVRLLSALDKLLRDKPRYMGELSTSINDALLAVDLNTVGLVTLQSRRKQTGRETQVVILRRLRKRIHQVAKKRNCSMNQLVNSALLAYYSKGGEGKLKRSTKGRGSSVHSYDSMSELERRELHQMLSGLSAMQSVPFEAEEPNRTYYEYDRNLKSTVKVTPDGERTPVEKLETRFEPARRKGTRIIAHEEITTCASKSQRCL
Ga0209139_1000079711F002076AGAAGGMQKDYRLCLEKLAGAPPKRKAALIRSLLPGIEAALNSGQSLKDIWEALGNEGLQMTYHVFHMTVWRARKTRKPTATSSWGKQDKPSESQGLQEAKVETVEGRDPFANLRRLEEDRPGFHWRGTRSLKTLVRGTEGPE
Ga0209139_1000079712F000673GGAGGMAKPRTERNLLFPSKEFRERVRKTSMERGFRSEQAFILAACEGEMRRSDNTESVTQFEARIAATLTNLAKQLQGLHTLAQAQVALTDVLLKYVITCVVEPPEDALPAARVRARLRYDKLIRAAAKEISSKNRNTLREMLADE
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