Scaffold Ga0209373_10087889

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209373_10087889

Scaffold Ga0209373_10087889

Overview

Basic Information
Taxon OID	3300027796 Open in IMG/M
Scaffold ID	Ga0209373_10087889 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1447
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location Name	University of Edinburgh
Coordinates	Lat. (^o)	55.9225	Long. (^o)	-3.1724	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022683	Metagenome / Metatranscriptome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209373_100878892	F022683	GGAGG	MASDMSDNMKPVADFYAKWSKDSLDMMSKGMTTYNKMSRGWTNVAEGSSGEKPDDVLKKWGDAFSGSYNDLFEMYTQPFKKFGAGQAPGKEAWEEAFAKWQKMFTSMPTGSAPTAAPDEFVNFSKNWFEGYAKVWQTWLESVQKMGDACKTAAVEGEKPGAAMSDVSEISDRFMKEWSAFVSEQAQSFFALWKSRLPAEKKEPKKARKE

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