NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209373_10124404

Scaffold Ga0209373_10124404


Overview

Basic Information
Taxon OID3300027796 Open in IMG/M
Scaffold IDGa0209373_10124404 Open in IMG/M
Source Dataset NameFreshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location NameUniversity of Edinburgh
CoordinatesLat. (o)55.9225Long. (o)-3.1724Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009063Metagenome / Metatranscriptome323N
F023544Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209373_101244041F009063N/AGRRFGSLYSFAGTRSGNPDDGTSVLNLAANDGNDTTTATATNTPFNGVLSNSGLGYFTIGTGETLQPFSPVLYKQLVTTAEQRFNAKITNMVVATSMRTAISDNIPQSRSINRFNPADKGDTIGTYEGDFNYTYQIDDSWVMDQTGADNTSALFLNPDVIQWGSLRELGPNNEVFSSADASLDQYIMEGTLIVRNPAGVAVLASITPTGSVVTTPRNSAYVKRYLT
Ga0209373_101244042F023544GGAGMNEDEHVEVNEDYYLKGNLEAGVDGVFRQNDKLFNEVKSGTWSQTFKTNNIDYKVGAIDGERYVQYDQKNVEAIREYCKGRREFYQMIGTTDNPFFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKQDKADKIKF

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