Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10000555 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10000555 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21529
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (82.86%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21529

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (82.86%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F008689	Metagenome	329	Y
F009888	Metagenome / Metatranscriptome	311	N
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N
F049000	Metagenome	147	Y
F078722	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000055516	F028165	GAGG	MALAFSLEEKKERIRQAMEVYATTGSWSNADNIVRRQSVEKWIRNTELLAYATSLGYQQMCTDEVASFAPPTAHYSHRMVFSAALIHLKESRYVARDGARIHYGINHGQLVMYKLDGAGTRHHAGPAYFRGADILANDWMIIR
Ga0209107_1000055517	F008689	GGA	MRFGEVIQALMAGGGNAVWRGEWGGAVFLRYSEVWNIFELHGPQKRVTQLEELSLSPGDLFATDWAIVVLDPRTGEVAK
Ga0209107_1000055519	F013760	GGA	MIPFAFGALVGAGCVVVWSEMYTRWLYKDVKRRAKRQGITDQQMKDALIWATTEEIEESLHGSTTRSR
Ga0209107_1000055530	F078722	GGAG	MSASEYTAIGIFVTGLVVSLLVYIVQFLHRMDKRNAVDTLTIKDHGHRLVKLEGDTGELKTRVTHLEANR
Ga0209107_1000055531	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDIAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK
Ga0209107_1000055534	F009888	GAGG	MALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYSFGSGSVTLTKQYSAQGILSVLNPAAYPTAANIRLTISFTVSTTVRRFGPLEIEVLAP
Ga0209107_100005554	F049000	AGGA	MAVYADDWLEVYIPRDLLDEVEYYSDGGHGYKCGSVFAMKHEETADYIMSNRDSELAKHFVDDYGVDLNDRAEVIKRIDRLNVSMGEEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10000555

Overview

Ecosystem & Geography

Associated Families

Sequences