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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027797 Open in IMG/M |
| Scaffold ID | Ga0209107_10000725 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18972 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (34.21%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009600 | Metagenome | 315 | Y |
| F010908 | Metagenome / Metatranscriptome | 297 | Y |
| F014228 | Metagenome | 264 | N |
| F015723 | Metagenome / Metatranscriptome | 252 | Y |
| F015858 | Metagenome / Metatranscriptome | 251 | Y |
| F024249 | Metagenome | 206 | N |
| F025437 | Metagenome | 201 | N |
| F039112 | Metagenome | 164 | Y |
| F082108 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209107_1000072511 | F009600 | N/A | MRILDPRQLSYKIVVGKVPSLNAFYASRHWTVRKNAKDKHCDEVLEQLYAMDCVQITDVHITCLVNYRYDVDNSIMVVKFALDAFKKWGAIRDDSPKYVKQIILVHSEAIAKDTAEIIFEGVIVE |
| Ga0209107_1000072512 | F039112 | N/A | MTLSFSSDVYTEMVQVQQAQIQALQNKIQELEARIDVLEQQSILFI |
| Ga0209107_1000072513 | F015723 | N/A | MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTIKIQRPNPYGASTGGGYTQSAPSFAPKGNDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPF |
| Ga0209107_1000072516 | F010908 | GAGG | MKQIFSPFQKYECFEVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRARLCKCK |
| Ga0209107_1000072517 | F025437 | GAG | MQMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHQSRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVCELSKYKELYLTLKRTFDEF |
| Ga0209107_1000072524 | F024249 | N/A | MTFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKWLGYVHVADFYNYEMDITYVEESYNEDGYTNTVAYPTTSIYGETPKLADDIYTKWMNWATQVASEE |
| Ga0209107_1000072533 | F082108 | N/A | MLYIVTPCSRPHNLVRLKQHIPAYATWVVMMDASTNYKEATGASVTHYSTRTGDMGNPLRNEFLDLYADSFTKEDWVYYLDDDNILHPKFLEEWNNLNSLDCSIVTWGQGGRLRPTDQPQVGNIDTACYMFKPYDLPNLRFEMSYEADGIFASEAARLGTLICVEQYLCYYNALK |
| Ga0209107_100007254 | F015858 | GAG | MANSISWGIIYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVEQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN |
| Ga0209107_100007259 | F014228 | N/A | MNSKLNPNRLAMWPILLTATLAVVSSCATVKPVLESVIVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |