NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10006710

Scaffold Ga0209107_10006710


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10006710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6465
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006463Metagenome / Metatranscriptome372N
F009004Metagenome / Metatranscriptome324Y
F009958Metagenome / Metatranscriptome310Y
F034772Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000671010F034772N/AMKNLIDYFTPRTQEHKSFLRHFLSTLTAFIVLGGMFYCLMYLKAL
Ga0209107_1000671011F009958N/AMENRNLEFWNKGWELTYEFLGWQYSIAGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHIINIRILEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL
Ga0209107_1000671012F006463N/AMKSGTTYEQLDWWKRQWRGSFDLHLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEQ
Ga0209107_100067109F009004AGGLVTHTNLKTMKTEFNKVIDFLEVQQQENKLNTNQLHLIIQTLCTFLDDEQLQEVENLFNQFKK
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