NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10180250

Scaffold Ga0209107_10180250


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10180250 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040464Metagenome / Metatranscriptome161N
F105037Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_101802501F105037N/AMSTYKIADFTTGAEDEEMVTSHLFHERDLALRGVTLILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWRLVLYYIGNCIRLKHYSCDCHSFL
Ga0209107_101802502F040464N/AMNKETRKYKNKVYTLNPMVSPEWLRRGYAFVGQTQEHLKDILKELILKMRVITDKEIEKDLRKGLRVTGDITLELNRFVRQGLEQRRTFKSLLGTLIETKNVALIKSILEVIEELKERSSLSPLLFSIAKEILREIQRIQAIIPIKELEQMEISLIDIQYWKLTRHLRI
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