NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209091_10032700

Scaffold Ga0209091_10032700


Overview

Basic Information
Taxon OID3300027801 Open in IMG/M
Scaffold IDGa0209091_10032700 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048582Metagenome148Y
F101898Metagenome102N
F103917Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209091_100327001F101898GAGGMDFQKMVRQFRENVLDENEPQLRPQLRQPRLINEMASADYRAAAEERVSDLEADISPTPLAWGSLFPEAVEGTNKPAPDGRATRMILDFIPNEMKMAIEIGKKLTKLGWTPDFDEKEVTQKKTVRNDQGEEERVETKENIAQLTYTKTIEKVIPKGPRAGEKIKKTMTAKLSQLIQKHGTPEEKEFWTKEQIRFTSID
Ga0209091_100327004F103917AGGAGMSEFKKGDLIYIPSVTIIFKWSDDENIPVGPTKTLKSPKRALFLKDVSDYYSQVIFDAERWTVKKTDIWELNSLPMIKGEQDLSSSRLMLEKGEENGGKIS
Ga0209091_100327005F048582AGGGGGMRVKMQYTVELEEVPAEARPLFSRANAEIQDAGDHMDDIFIAVDSGSDYDNVLDSIDQARKNLAEADFRLGDAAAILHGYLQEKHAPQPEPQPSMDFEQLQEKLETLSVLKDALPDAEGE
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