NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209091_10035379

Scaffold Ga0209091_10035379


Overview

Basic Information
Taxon OID3300027801 Open in IMG/M
Scaffold IDGa0209091_10035379 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3017
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F099884Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209091_100353792F099884GGAGMENLIEKISETRQERLLNPQMSDHFKTFFQGKYGVKIYDIKVGRKWVYIRSNSHRAKLSMAKFKTQAFVQWHCDARTHASSETYAETGKYKKKQGWWKNYGFESNPADVNINRGHLIWK
Ga0209091_100353797F002593GGAGMAQEKRKVTYSRTGSETTQSIEDASPMIKAVWNEAHQFGANIVRVRRDENRFGNDTGKTFNSFHHGKVSVYKQKPNPKEEDALYFARKVPVTKANTGMQILEISTNIDIQDTLDTIDDIQYYAETSFLGRLYNRIVYGTPMSLKS
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Institute for Fundamental Biomedical Research
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