NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209091_10122581

Scaffold Ga0209091_10122581


Overview

Basic Information
Taxon OID3300027801 Open in IMG/M
Scaffold IDGa0209091_10122581 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1371
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F040325Metagenome / Metatranscriptome162Y
F074009Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209091_101225812F040325N/AMARRKIGNSHTTICVSWEDKELFRKFAKFVKTTRTGKLYESDAVLFSKMLLFFKESNAMGDISNTTYPSKHQEPTQPR
Ga0209091_101225813F007003N/AMFGIKLKLMIHYFTKNIDEKKYNDIIQRIIMINGHDGTSNSGYKAWKNFEDNWELNIIPVTDQEDFKSYYEHLNVETSDGIAWGVTGMKVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRVYDSPEGRANTRAAAATVIVHDNWYGSKETIKVWIRWGMIWLPITIPFIPVKVAKEIYPI
Ga0209091_101225814F074009N/AMGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYATQGTLTSTSTGGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDR
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