 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027804 Open in IMG/M |
| Scaffold ID | Ga0209358_10000753 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27660 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (73.85%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F013527 | Metagenome / Metatranscriptome | 270 | Y |
| F068831 | Metagenome / Metatranscriptome | 124 | N |
| F085700 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209358_1000075330 | F013527 | N/A | VLVIMPVYEFNAFINVEAESYDEAIDTFQFQLKYGINKNNVYVADIRDLELSE |
| Ga0209358_100007534 | F068831 | N/A | MEGHATLHGNVNDAIEAIENKLGVNGSTDVNSIDYKVSQLQANLSTLDAENASEILGLDGNNDLTIDGIENKTTIDSFSKAVYKTVRYTLQIDKSVGNLTHTSTIVLLNDGTNVYISESDIVSNTDLSLATVTFEENSGIISLCVTPVSGSIKVRYFRTALKA |
| Ga0209358_1000075354 | F007644 | GGAG | MKLHLISLEQDLESNPESINVIDIPGQIEATRHLLSVATDIMNNNERVY |
| Ga0209358_1000075361 | F085700 | N/A | VGILLSGGKLGKGRVLASFTNVSGQWYNQNERRNSMAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMLEAKYGAVDRNLTIDSLKETRVRDPKYIMDLDSF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |