NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209358_10079841

Scaffold Ga0209358_10079841


Overview

Basic Information
Taxon OID3300027804 Open in IMG/M
Scaffold IDGa0209358_10079841 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1858
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003327Metagenome / Metatranscriptome494Y
F004234Metagenome / Metatranscriptome447Y
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209358_100798412F071222N/AMDKEQIMKIILAEEASLYDQAVELRDAFGNEDPATKRAYSQWVVIINLIDKINEKTN
Ga0209358_100798414F004234N/AMNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDDEYMSLFILNDANLNLLKSKL
Ga0209358_100798415F003327N/AMTEFTQLAIEVQDAIANGDYTHQKYLRFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNED
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