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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027805 Open in IMG/M |
| Scaffold ID | Ga0209229_10000290 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20127 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (37.14%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sandusky Bay, Ohio, USA | |||||||
| Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001780 | Metagenome / Metatranscriptome | 635 | Y |
| F001923 | Metagenome / Metatranscriptome | 617 | Y |
| F002413 | Metagenome / Metatranscriptome | 561 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F004790 | Metagenome / Metatranscriptome | 423 | Y |
| F014261 | Metagenome | 264 | Y |
| F028807 | Metagenome / Metatranscriptome | 190 | Y |
| F039626 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209229_1000029010 | F002413 | N/A | MTEAPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAANHYMDYLGLEGDFFREDFKVDNRDFLVNAGKFARRLDKDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRAAHLFDQEYIFKPDARNQIMSEGRILAKSWRL |
| Ga0209229_1000029023 | F000957 | GGAGG | MSAFKHLDGMVALLSEIYEINERVMCGDICSAKTAIASTKMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV |
| Ga0209229_1000029026 | F003714 | N/A | MPNANHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYKTRA |
| Ga0209229_1000029027 | F014261 | N/A | MKSLIALSFLIIFGWLAVVTFCGPELYRAINGPEPVKAKAIRRSR |
| Ga0209229_1000029028 | F003583 | N/A | MGKAKPTSQQPSGGSNLVLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQNAS |
| Ga0209229_1000029029 | F001923 | N/A | VSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVAGKPSKPHGKGKANKPAAKRGK |
| Ga0209229_100002903 | F039626 | GAG | MKPCDSKTRQLAELARFEKAKRDAVIVETYLRCRTIHATRQALDFTHSREVVRRAISKAGVYDKSNRDQVLIAKFKPSPKKSKWDDRTYSKSHGSELHMQTEAEQMLKDACVAYPRHIQREVQVPGCQMRADLVGFNWAIETKKECSSQGMLTAMAQCLVYRKHLNKRHVCIMLPDDLEPASFYVSECLSYGIPVIKMSQLIWWVNTVQNDAQPN |
| Ga0209229_1000029033 | F028807 | AGG | MNYTYKVSMSGVHLADPYAFLKAVFPQWNGEPAQSNGAYVQVTFDTPQTPADLGPLVKVELISNL |
| Ga0209229_100002904 | F001780 | N/A | VTKASINDLSAPARDAKSFDAWFFAQPKKVQEKMRENGVLPYREMSQSRHVFQVDANHPAWSTKDGDNLRKETEAFISRDHVGVMLKGFIDALAATDNFAFRRHVETVRWALSLPGCLDSRTIGKMYGRSHFWMRSRAKEIQRAVNSDAVGMFPHVNARRDKHKQARPRPAPHNP |
| Ga0209229_100002909 | F004790 | N/A | METLTPETIKWGMRIGIAPDRMAFLASCPKFTVCHGNRKSERNVKDNPNHHLQRLGSCWWFRLRRRGKDIVENIGGDLTTARKRRDEMLAAFDAGKPIPYLANK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |