NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000548

Scaffold Ga0209229_10000548


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000548 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15310
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016267Metagenome248Y
F018532Metagenome / Metatranscriptome234N
F074556Metagenome119Y
F100701Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000054816F018532AGGAGMDQTLELLLSRIDDQRKTVLNNLGDGAAKDFASYQNMAGYIRGLSVAESLIKDLAQRMETFEDE
Ga0209229_1000054820F074556N/AVTQQPMQTQNNEENQQLDQNSVVMYPNIDENVPIPKSARDALPDLTNEEEIEMLANTVKLLADLTGQQIQATQDDIDEAKTVIKTMIKEPQTKLQLKKYKNATLASLAGMVAELDAQVVDELKDLKTFVVNGLIREAATADKPKERITALRAIGDIDGVDAFKKHTEVVHKSMSMDDIEVRLQTLVGKLQKRLDEKEVSGEVVENGE
Ga0209229_1000054824F100701AGGMKTLNMKQIGYNQASFSDSIKGIAREVYAGYPNFDEEVSDEVKAELNAGYLLRVAENQPKHKQHFVIESGNYIPVDELAFNKFEGAKYIRSVDNIMAYTPQAFGALRTSNPQLHSILKESRDAISKYCSNTLNALKKAVREIKNEGKTRERGATKSFAETVKDTMDGLKKKCANAKARVDETADEKKLVLAISEFNRKWLAK
Ga0209229_100005485F016267AGGTGGMSAERELAEHGVEIKHIQSDVDTIMEDMEQLKKRLDGIEKTLEEIKGGWKVFIGIATVGSMIISWFVNHWLK
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