NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10001333

Scaffold Ga0209229_10001333


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10001333 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10193
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015312Metagenome / Metatranscriptome255Y
F028788Metagenome / Metatranscriptome190Y
F046259Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000133316F015312GAGGMKELNPGKIRPNTDSTGRNGYPEKDVNKGVTHMDMKGAGAATKGKKFVSQINLDTNMKYRAGWTP
Ga0209229_1000133318F046259AGGAMFNGNTEIGDVFVQTTDHRGHTVDEIAERAANRILRVDTKEALHYWLVKYLTEAQEIERKEICKKLDKQGYSEIAHLIGDL
Ga0209229_100013333F028788AGGAGMGMQTDVLASKVRTDAGQLLDQNSLVIGRARVKAIYIVPDSGAGTVTFIDGGASGATKIVVNTKASSTSADYILMPGEGLLFQNNIYIVPSAVISTMVIYG
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