NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10001532

Scaffold Ga0209229_10001532


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10001532 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9513
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012116Metagenome283Y
F068573Metagenome124Y
F100665Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000153225F012116AGGAMKPLAWLVEEFDSTGKLVWSGLMTSEPTEMSWLKDLKLKLHNVTITPLIADTKGIIKVTNTKKYDSKRLTEANGGL
Ga0209229_1000153226F068573GGAGGMVDYKPLTQEQIIDAYSKVFPTRYEPMTIDRMIQFARIIEQLHGVKHEA
Ga0209229_1000153228F100665GGAGMKKPYISVVSIKDTDEGECKLTLDMNQAGREIILQAGIQKALADYMVTNTKKLSFWNKLQICWSILK
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