NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10002512

Scaffold Ga0209229_10002512


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10002512 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7561
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F009685Metagenome / Metatranscriptome314Y
F026561Metagenome / Metatranscriptome197Y
F033433Metagenome / Metatranscriptome177Y
F045752Metagenome / Metatranscriptome152Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000251219F045752GAGGVADPTQTPARGDWACPCSGCQKAVAWERKQTIELLEVKKTEYLIYRGSSFDEDGNLLWAKDDALSYVEGIDIAINLIKDRMPKPKVKK
Ga0209229_100025122F002387AGGCGGMASFLEDVNQMVIDAVITDIGAQLFDEWMNANLDEGQYYADKRFAEMSGDEFIMNEFNKFYELTEEDEDYQC
Ga0209229_1000251221F026561GGAMSEDGTGMTPPPAAGSASGAVTSREATRKRPTQGMRSGIKVDTNRHGIRRETSTDPKPPKKTGRKKV
Ga0209229_100025123F001460GAGGMLGYDEEDLNRMINAIHDAKLFYLRTPSDLMDKEPLVKDLQDAVSFLQGLWAEGYFD
Ga0209229_100025124F063705GGAGGLTKSSHFLEYIRLHKISLEQDWEAAKNNEPLNEDEYDPSDDYFEGAITATEHLLSVATDIMNSPNERYE
Ga0209229_100025126F033433GGAGMYNKPSLEILEVNYSVSPGGVDEFEVYSLDERDSFDPPIFSTTSLHEAVQYCYDLGKDFIVRTFAEWEARELA
Ga0209229_100025128F009685GAGGMKMSDQYIDDVLNRAQQLLWGGSETENIEAHNLIAKLIKDRMKHSQPGAELPGYDHN
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